HL_8INF_045

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

8INF|1|2|C|2739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INF_045 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.1077

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8INF|1|2|C|2738
8INF|1|2|C|2739
8INF|1|2|U|2740
8INF|1|2|U|2741
8INF|1|2|G|2742

Current chains

Chain 2

28S rRNA

Nearby chains

Chain X

60S ribosomal protein L37a

Chain m

60S ribosomal protein L8