HL_8INF_052

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

8INF|1|2|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INF_052 not in the Motif Atlas

Geometric match to HL_4QK9_001

Geometric discrepancy: 0.3548

The information below is about HL_4QK9_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8INF|1|2|C|3668
8INF|1|2|G|3669
8INF|1|2|C|3670
8INF|1|2|G|3671
8INF|1|2|G|3672
8INF|1|2|C|3673
8INF|1|2|G|3674

Current chains

Chain 2

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain U

60S ribosomal protein L15

Chain m

60S ribosomal protein L8