3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
AGAAAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8INF_053 not in the Motif Atlas
Homologous match to HL_5TBW_048
Geometric discrepancy: 0.1194
The information below is about HL_5TBW_048
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

8INF|1|2|A|3724
8INF|1|2|G|3725
8INF|1|2|A|3726
8INF|1|2|A|3727
8INF|1|2|A|3728
8INF|1|2|U|3729

Current chains

Chain 2
28S rRNA

Nearby chains

Chain K
60S ribosomal protein L36
Chain W
60S ribosomal protein L36a

Coloring options:


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