HL_8INF_055

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGAACG(P7G)GC

Length

10 nucleotides

Bulged bases

8INF|1|2|A|3876, 8INF|1|2|A|3877, 8INF|1|2|C|3878, 8INF|1|2|G|3881

QA status

Modified nucleotides: P7G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INF_055 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.3453

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8INF|1|2|G|3873
8INF|1|2|G|3874
8INF|1|2|G|3875
8INF|1|2|A|3876
8INF|1|2|A|3877
8INF|1|2|C|3878
8INF|1|2|G|3879
8INF|1|2|P7G|3880
8INF|1|2|G|3881
8INF|1|2|C|3882

Current chains

Chain 2

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain k

60S ribosomal protein L32