HL_8INF_056

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCU

Length

54 nucleotides

Bulged bases

8INF|1|2|G|3958, 8INF|1|2|A|3962, 8INF|1|2|A|3972, 8INF|1|2|G|4035, 8INF|1|2|C|4038, 8INF|1|2|U|4044, 8INF|1|2|A|4047, 8INF|1|2|C|4052, 8INF|1|2|C|4054

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INF|1|2|G|3951
8INF|1|2|A|3952
8INF|1|2|G|3953
8INF|1|2|A|3954
8INF|1|2|G|3955
8INF|1|2|G|3956
8INF|1|2|U|3957
8INF|1|2|G|3958
8INF|1|2|U|3959
8INF|1|2|A|3960
8INF|1|2|G|3961
8INF|1|2|A|3962
8INF|1|2|A|3963
8INF|1|2|U|3964
8INF|1|2|A|3965
8INF|1|2|A|3966
8INF|1|2|G|3967
8INF|1|2|U|3968
8INF|1|2|G|3969
8INF|1|2|G|3970
8INF|1|2|G|3971
8INF|1|2|A|3972
8INF|1|2|G|3973
8INF|1|2|G|3974
8INF|1|2|C|3975
8INF|1|2|C|3976
8INF|1|2|C|3977
8INF|1|2|G|4034
8INF|1|2|G|4035
8INF|1|2|G|4036
8INF|1|2|C|4037
8INF|1|2|C|4038
8INF|1|2|G|4039
8INF|1|2|C|4040
8INF|1|2|C|4041
8INF|1|2|G|4042
8INF|1|2|G|4043
8INF|1|2|U|4044
8INF|1|2|G|4045
8INF|1|2|A|4046
8INF|1|2|A|4047
8INF|1|2|A|4048
8INF|1|2|U|4049
8INF|1|2|A|4050
8INF|1|2|C|4051
8INF|1|2|C|4052
8INF|1|2|A|4053
8INF|1|2|C|4054
8INF|1|2|U|4055
8INF|1|2|A|4056
8INF|1|2|C|4057
8INF|1|2|U|4058
8INF|1|2|C|4059
8INF|1|2|U|4060

Current chains

Chain 2

28S rRNA

Nearby chains

Chain f

Protein SDA1 homolog

Chain q

60S ribosomal protein L10a