HL_8INF_066

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

8INF|1|2|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INF_066 not in the Motif Atlas

Geometric match to HL_6DTD_001

Geometric discrepancy: 0.3944

The information below is about HL_6DTD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8INF|1|2|A|4473
8INF|1|2|A|4474
8INF|1|2|G|4475
8INF|1|2|C|4476
8INF|1|2|A|4477
8INF|1|2|G|4478
8INF|1|2|A|4479
8INF|1|2|A|4480
8INF|1|2|U|4481
8INF|1|2|U|4482

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain I

60S ribosomal protein L9

Chain s

Ribosome biogenesis protein NSA2 homolog