3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GUAGACGAC
Length
9 nucleotides
Bulged bases
8INF|1|2|U|4976
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8INF_074 not in the Motif Atlas
Geometric match to HL_5J7L_201
Geometric discrepancy: 0.0964
The information below is about HL_5J7L_201
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_64690.6
Basepair signature
cWW-cSW-F-F-F-F
Number of instances in this motif group
9

Unit IDs

8INF|1|2|G|4975
8INF|1|2|U|4976
8INF|1|2|A|4977
8INF|1|2|G|4978
8INF|1|2|A|4979
8INF|1|2|C|4980
8INF|1|2|G|4981
8INF|1|2|A|4982
8INF|1|2|C|4983

Current chains

Chain 2
28S rRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain Y
60S ribosomal protein L17

Coloring options:


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