HL_8INK_009

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

8INK|1|2|G|315, 8INK|1|2|U|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INK_009 not in the Motif Atlas

Homologous match to HL_8C3A_009

Geometric discrepancy: 0.201

The information below is about HL_8C3A_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_15076.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8INK|1|2|G|314
8INK|1|2|G|315
8INK|1|2|U|316
8INK|1|2|A|317
8INK|1|2|A|318
8INK|1|2|A|319
8INK|1|2|C|320
8INK|1|2|U|321
8INK|1|2|C|322
8INK|1|2|C|323

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36

Chain L

60S ribosomal protein L27a

Chain U

60S ribosomal protein L15