HL_8INK_016

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCCGAAGAGGG

Length

11 nucleotides

Bulged bases

8INK|1|2|A|1255, 8INK|1|2|G|1256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INK_016 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.3088

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8INK|1|2|C|1250
8INK|1|2|C|1251
8INK|1|2|C|1252
8INK|1|2|G|1253
8INK|1|2|A|1254
8INK|1|2|A|1255
8INK|1|2|G|1256
8INK|1|2|A|1257
8INK|1|2|G|1258
8INK|1|2|G|1259
8INK|1|2|G|1260

Current chains

Chain 2

28S rRNA

Nearby chains