HL_8INK_017

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

C(OMG)UCUUGAAC(A2M)CG

Length

13 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INK|1|2|C|1315
8INK|1|2|OMG|1316
8INK|1|2|U|1317
8INK|1|2|C|1318
8INK|1|2|U|1319
8INK|1|2|U|1320
8INK|1|2|G|1321
8INK|1|2|A|1323
8INK|1|2|A|1324
8INK|1|2|C|1325
8INK|1|2|A2M|1326
8INK|1|2|C|1327
8INK|1|2|G|1328

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain k

60S ribosomal protein L32

Chain w

G Protein Nucleolar 2