HL_8INK_039

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

8INK|1|2|U|2530, 8INK|1|2|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INK_039 not in the Motif Atlas

Geometric match to HL_5TBW_035

Geometric discrepancy: 0.1242

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8INK|1|2|G|2523
8INK|1|2|U|2524
8INK|1|2|U|2525
8INK|1|2|C|2526
8INK|1|2|A|2527
8INK|1|2|G|2528
8INK|1|2|A|2529
8INK|1|2|U|2530
8INK|1|2|C|2531
8INK|1|2|C|2532

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain a

60S ribosomal protein L19

Chain g

60S ribosomal protein L23a