HL_8INK_053

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INK_053 not in the Motif Atlas

Geometric match to HL_6CB3_005

Geometric discrepancy: 0.1887

The information below is about HL_6CB3_005

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8INK|1|2|A|3724
8INK|1|2|G|3725
8INK|1|2|A|3726
8INK|1|2|A|3727
8INK|1|2|A|3728
8INK|1|2|U|3729

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36