HL_8INK_055

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAACG(P7G)GC

Length

10 nucleotides

Bulged bases

8INK|1|2|G|3875, 8INK|1|2|C|3878, 8INK|1|2|G|3881

QA status

Modified nucleotides: P7G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INK_055 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.072

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8INK|1|2|G|3873
8INK|1|2|G|3874
8INK|1|2|G|3875
8INK|1|2|A|3876
8INK|1|2|A|3877
8INK|1|2|C|3878
8INK|1|2|G|3879
8INK|1|2|P7G|3880
8INK|1|2|G|3881
8INK|1|2|C|3882

Current chains

Chain 2

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain k

60S ribosomal protein L32

Chain u

Guanine nucleotide-binding protein-like 3