HL_8INK_061

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUUACGA

Length

8 nucleotides

Bulged bases

8INK|1|2|U|4306, 8INK|1|2|A|4307

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INK_061 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3409

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8INK|1|2|U|4300
8INK|1|2|U|4301
8INK|1|2|U|4302
8INK|1|2|U|4306
8INK|1|2|A|4307
8INK|1|2|C|4308
8INK|1|2|G|4309
8INK|1|2|A|4310

Current chains

Chain 2

28S rRNA

Nearby chains

Chain T

60S ribosomal protein L21