HL_8IPD_005

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8IPD|1|2|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPD_005 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.2503

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8IPD|1|2|U|204
8IPD|1|2|C|205
8IPD|1|2|U|206
8IPD|1|2|G|207
8IPD|1|2|A|208
8IPD|1|2|U|209
8IPD|1|2|C|210
8IPD|1|2|G|211

Current chains

Chain 2

28S rRNA

Nearby chains

Chain h

60S ribosomal protein L26