HL_8IPD_033

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPD_033 not in the Motif Atlas

Geometric match to HL_4V9F_041

Geometric discrepancy: 0.2012

The information below is about HL_4V9F_041

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8IPD|1|2|C|2257
8IPD|1|2|C|2258
8IPD|1|2|G|2259
8IPD|1|2|C|2260
8IPD|1|2|G|2261

Current chains

Chain 2

28S rRNA

Nearby chains

Chain l

60S ribosomal protein L28

Chain o

60S ribosomal protein L6