HL_8IPD_044
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGUUCCGG
- Length
- 9 nucleotides
- Bulged bases
- 8IPD|1|2|U|2707, 8IPD|1|2|C|2709, 8IPD|1|2|G|2711
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IPD_044 not in the Motif Atlas
- Geometric match to HL_5NFV_001
- Geometric discrepancy: 0.1207
- The information below is about HL_5NFV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.4
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8IPD|1|2|C|2704
8IPD|1|2|G|2705
8IPD|1|2|G|2706
8IPD|1|2|U|2707
8IPD|1|2|U|2708
8IPD|1|2|C|2709
8IPD|1|2|C|2710
8IPD|1|2|G|2711
8IPD|1|2|G|2712
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain O
- 60S ribosomal protein L38
- Chain a
- 60S ribosomal protein L19
- Chain d
- 60S ribosomal protein L22
- Chain g
- 60S ribosomal protein L23a
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