HL_8IPD_059

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPD_059 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.2692

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8IPD|1|2|G|4250
8IPD|1|2|A|4251
8IPD|1|2|C|4252
8IPD|1|2|A|4253
8IPD|1|2|G|4254
8IPD|1|2|A|4255
8IPD|1|2|A|4256
8IPD|1|2|A|4257
8IPD|1|2|C|4258

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L11

Chain W

Notchless protein homolog 1