HL_8IPD_065

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

8IPD|1|2|U|4498, 8IPD|1|2|G|4499, 8IPD|1|2|U|4500, 8IPD|1|2|C|4502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPD_065 not in the Motif Atlas

Geometric match to HL_4ZLD_001

Geometric discrepancy: 0.2787

The information below is about HL_4ZLD_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8IPD|1|2|U|4497
8IPD|1|2|U|4498
8IPD|1|2|G|4499
8IPD|1|2|U|4500
8IPD|1|2|U|4501
8IPD|1|2|C|4502
8IPD|1|2|A|4503

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain B

60S ribosomal protein L3

Chain w

G Protein Nucleolar 2