HL_8IPD_080

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAA(OMG)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPD_080 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.1151

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8IPD|1|2|C|368
8IPD|1|2|G|369
8IPD|1|2|U|370
8IPD|1|2|A|371
8IPD|1|2|A|372
8IPD|1|2|OMG|373

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain D

60S ribosomal protein L4

Chain M

60S ribosomal protein L37

Chain P

60S ribosomal protein L39