HL_8IPY_005

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8IPY|1|2|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPY_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.271

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8IPY|1|2|U|204
8IPY|1|2|C|205
8IPY|1|2|U|206
8IPY|1|2|G|207
8IPY|1|2|A|208
8IPY|1|2|U|209
8IPY|1|2|C|210
8IPY|1|2|G|211

Current chains

Chain 2

28S rRNA

Nearby chains

Chain h

60S ribosomal protein L26

Chain k

60S ribosomal protein L32