3D structure

PDB id
8IPY (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State D'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCGUAA(OMG)G
Length
8 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8IPY_010 not in the Motif Atlas
Geometric match to HL_7A0S_056
Geometric discrepancy: 0.3352
The information below is about HL_7A0S_056
Detailed Annotation
GNRA with extra cWW
Broad Annotation
GNRA with extra cWW
Motif group
HL_45359.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

8IPY|1|2|C|367
8IPY|1|2|C|368
8IPY|1|2|G|369
8IPY|1|2|U|370
8IPY|1|2|A|371
8IPY|1|2|A|372
8IPY|1|2|OMG|373
8IPY|1|2|G|374

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain D
60S ribosomal protein L4
Chain M
60S ribosomal protein L37
Chain P
60S ribosomal protein L39

Coloring options:


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