HL_8IPY_014

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCCGGCGCGCCGG

Length

14 nucleotides

Bulged bases

8IPY|1|2|C|991, 8IPY|1|2|G|996, 8IPY|1|2|C|1049, 8IPY|1|2|G|1051

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPY|1|2|U|989
8IPY|1|2|C|990
8IPY|1|2|C|991
8IPY|1|2|C|992
8IPY|1|2|G|993
8IPY|1|2|G|994
8IPY|1|2|C|995
8IPY|1|2|G|996
8IPY|1|2|C|1047
8IPY|1|2|G|1048
8IPY|1|2|C|1049
8IPY|1|2|C|1050
8IPY|1|2|G|1051
8IPY|1|2|G|1064

Current chains

Chain 2

28S rRNA

Nearby chains

Chain o

60S ribosomal protein L6