HL_8IPY_017

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

C(OMG)UCAAAC(A2M)CG

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPY_017 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1509

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8IPY|1|2|C|1315
8IPY|1|2|OMG|1316
8IPY|1|2|U|1317
8IPY|1|2|C|1318
8IPY|1|2|A|1322
8IPY|1|2|A|1323
8IPY|1|2|A|1324
8IPY|1|2|C|1325
8IPY|1|2|A2M|1326
8IPY|1|2|C|1327
8IPY|1|2|G|1328

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain k

60S ribosomal protein L32