HL_8IPY_020

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGCGCUCGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPY_020 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.209

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8IPY|1|2|G|1404
8IPY|1|2|C|1405
8IPY|1|2|G|1406
8IPY|1|2|C|1407
8IPY|1|2|G|1408
8IPY|1|2|C|1409
8IPY|1|2|U|1410
8IPY|1|2|C|1411
8IPY|1|2|G|1412
8IPY|1|2|C|1413

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L29