HL_8IPY_033

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPY_033 not in the Motif Atlas

Geometric match to HL_4WF9_037

Geometric discrepancy: 0.2457

The information below is about HL_4WF9_037

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8IPY|1|2|C|2257
8IPY|1|2|C|2258
8IPY|1|2|G|2259
8IPY|1|2|C|2260
8IPY|1|2|G|2261

Current chains

Chain 2

28S rRNA

Nearby chains

Chain l

60S ribosomal protein L28

Chain o

60S ribosomal protein L6