HL_8IPY_039
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUCAGAUCC
- Length
- 10 nucleotides
- Bulged bases
- 8IPY|1|2|U|2530, 8IPY|1|2|C|2531
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IPY_039 not in the Motif Atlas
- Homologous match to HL_5TBW_035
- Geometric discrepancy: 0.1468
- The information below is about HL_5TBW_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8IPY|1|2|G|2523
8IPY|1|2|U|2524
8IPY|1|2|U|2525
8IPY|1|2|C|2526
8IPY|1|2|A|2527
8IPY|1|2|G|2528
8IPY|1|2|A|2529
8IPY|1|2|U|2530
8IPY|1|2|C|2531
8IPY|1|2|C|2532
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L34
- Chain a
- 60S ribosomal protein L19
- Chain g
- 60S ribosomal protein L23a
- Chain q
- Pescadillo homolog
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