HL_8IPY_052

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

8IPY|1|2|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPY_052 not in the Motif Atlas

Geometric match to HL_1MFQ_001

Geometric discrepancy: 0.3856

The information below is about HL_1MFQ_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8IPY|1|2|C|3668
8IPY|1|2|G|3669
8IPY|1|2|C|3670
8IPY|1|2|G|3671
8IPY|1|2|G|3672
8IPY|1|2|C|3673
8IPY|1|2|G|3674

Current chains

Chain 2

28S rRNA

Nearby chains

Chain U

60S ribosomal protein L15

Chain m

60S ribosomal protein L8