3D structure

PDB id
8IPY (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State D'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UCGCACGAAA
Length
10 nucleotides
Bulged bases
8IPY|1|2|C|1365, 8IPY|1|2|G|1366, 8IPY|1|2|C|1367, 8IPY|1|2|A|1371
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8IPY|1|2|U|1364
8IPY|1|2|C|1365
8IPY|1|2|G|1366
8IPY|1|2|C|1367
8IPY|1|2|A|1368
8IPY|1|2|C|1369
8IPY|1|2|G|1370
8IPY|1|2|A|1371
8IPY|1|2|A|1372
8IPY|1|2|A|1373

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain D
60S ribosomal protein L4
Chain Q
60S ribosomal protein L13
Chain U
60S ribosomal protein L15
Chain h
60S ribosomal protein L26

Coloring options:

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