HL_8IPY_088

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCCCCGAGGGGCU

Length

14 nucleotides

Bulged bases

8IPY|1|2|G|4099, 8IPY|1|2|C|4100, 8IPY|1|2|G|4104, 8IPY|1|2|A|4105, 8IPY|1|2|G|4108, 8IPY|1|2|G|4109, 8IPY|1|2|C|4110

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPY|1|2|A|4098
8IPY|1|2|G|4099
8IPY|1|2|C|4100
8IPY|1|2|C|4101
8IPY|1|2|C|4102
8IPY|1|2|C|4103
8IPY|1|2|G|4104
8IPY|1|2|A|4105
8IPY|1|2|G|4106
8IPY|1|2|G|4107
8IPY|1|2|G|4108
8IPY|1|2|G|4109
8IPY|1|2|C|4110
8IPY|1|2|U|4111

Current chains

Chain 2

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a