HL_8IR1_001
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 8IR1|1|2|A|39, 8IR1|1|2|A|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IR1_001 not in the Motif Atlas
- Homologous match to HL_8C3A_001
- Geometric discrepancy: 0.1862
- The information below is about HL_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36430.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8IR1|1|2|U|37
8IR1|1|2|A|38
8IR1|1|2|A|39
8IR1|1|2|G|40
8IR1|1|2|C|41
8IR1|1|2|A|42
8IR1|1|2|U|43
8IR1|1|2|A|44
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain Q
- 60S ribosomal protein L13
Coloring options: