HL_8IR1_005

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8IR1|1|2|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR1_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.2659

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8IR1|1|2|U|204
8IR1|1|2|C|205
8IR1|1|2|U|206
8IR1|1|2|G|207
8IR1|1|2|A|208
8IR1|1|2|U|209
8IR1|1|2|C|210
8IR1|1|2|G|211

Current chains

Chain 2

28S rRNA

Nearby chains

Chain h

60S ribosomal protein L26