HL_8IR1_014

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCCCGGCGCGCCGG

Length

14 nucleotides

Bulged bases

8IR1|1|2|C|991, 8IR1|1|2|C|992, 8IR1|1|2|C|995, 8IR1|1|2|G|996, 8IR1|1|2|C|1049

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR1_014 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.352

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8IR1|1|2|U|989
8IR1|1|2|C|990
8IR1|1|2|C|991
8IR1|1|2|C|992
8IR1|1|2|G|993
8IR1|1|2|G|994
8IR1|1|2|C|995
8IR1|1|2|G|996
8IR1|1|2|C|1047
8IR1|1|2|G|1048
8IR1|1|2|C|1049
8IR1|1|2|C|1050
8IR1|1|2|G|1051
8IR1|1|2|G|1064

Current chains

Chain 2

28S rRNA

Nearby chains

Chain o

60S ribosomal protein L6