HL_8IR1_018
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUCGCACGAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8IR1|1|2|C|1367, 8IR1|1|2|A|1371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IR1_018 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3003
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8IR1|1|2|C|1363
8IR1|1|2|U|1364
8IR1|1|2|C|1365
8IR1|1|2|G|1366
8IR1|1|2|C|1367
8IR1|1|2|A|1368
8IR1|1|2|C|1369
8IR1|1|2|G|1370
8IR1|1|2|A|1371
8IR1|1|2|A|1372
8IR1|1|2|A|1373
8IR1|1|2|G|1374
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- 60S ribosomal protein L4
- Chain Q
- 60S ribosomal protein L13
- Chain U
- 60S ribosomal protein L15
- Chain h
- 60S ribosomal protein L26
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