HL_8IR1_019

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR1_019 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.1114

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8IR1|1|2|U|1389
8IR1|1|2|G|1390
8IR1|1|2|A|1391
8IR1|1|2|A|1392
8IR1|1|2|G|1393
8IR1|1|2|G|1394

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13