HL_8IR1_022
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCGCG
- Length
- 5 nucleotides
- Bulged bases
- 8IR1|1|2|C|1481, 8IR1|1|2|G|1482
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IR1_022 not in the Motif Atlas
- Geometric match to HL_4L8H_001
- Geometric discrepancy: 0.3057
- The information below is about HL_4L8H_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_90436.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 37
Unit IDs
8IR1|1|2|C|1480
8IR1|1|2|C|1481
8IR1|1|2|G|1482
8IR1|1|2|C|1483
8IR1|1|2|G|1484
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain K
- 60S ribosomal protein L36
- Chain Q
- 60S ribosomal protein L13
Coloring options: