HL_8IR1_027

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCCGGUAAAACUUUAAAU(E7G)G

Length

20 nucleotides

Bulged bases

8IR1|1|2|A|1788, 8IR1|1|2|C|1789

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR1|1|2|U|1730
8IR1|1|2|C|1731
8IR1|1|2|C|1732
8IR1|1|2|G|1733
8IR1|1|2|G|1734
8IR1|1|2|U|1735
8IR1|1|2|A|1736
8IR1|1|2|A|1737
8IR1|1|2|A|1738
8IR1|1|2|A|1788
8IR1|1|2|C|1789
8IR1|1|2|U|1790
8IR1|1|2|U|1791
8IR1|1|2|U|1792
8IR1|1|2|A|1793
8IR1|1|2|A|1794
8IR1|1|2|A|1795
8IR1|1|2|U|1796
8IR1|1|2|E7G|1797
8IR1|1|2|G|1798

Current chains

Chain 2

28S rRNA

Nearby chains

Chain b

60S ribosomal protein L18a

Chain c

60S ribosomal protein L21

Chain p

60S ribosomal protein L7

Chain u

Guanine nucleotide-binding protein-like 3