3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
8IR1|1|2|U|2874
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8IR1_047 not in the Motif Atlas
Geometric match to HL_4WF9_040
Geometric discrepancy: 0.1562
The information below is about HL_4WF9_040
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_61337.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
49

Unit IDs

8IR1|1|2|C|2872
8IR1|1|2|U|2873
8IR1|1|2|U|2874
8IR1|1|2|C|2875
8IR1|1|2|G|2876
8IR1|1|2|G|2877

Current chains

Chain 2
28S rRNA

Nearby chains

Chain X
60S ribosomal protein L37a
Chain w
G Protein Nucleolar 2

Coloring options:


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