HL_8IR1_051

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

8IR1|1|2|C|3673

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR1_051 not in the Motif Atlas

Geometric match to HL_1U6B_004

Geometric discrepancy: 0.3703

The information below is about HL_1U6B_004

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8IR1|1|2|C|3668
8IR1|1|2|G|3669
8IR1|1|2|C|3670
8IR1|1|2|G|3671
8IR1|1|2|G|3672
8IR1|1|2|C|3673
8IR1|1|2|G|3674

Current chains

Chain 2

28S rRNA

Nearby chains

Chain U

60S ribosomal protein L15