HL_8IR1_052

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAGAAAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR1_052 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.301

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8IR1|1|2|A|3723
8IR1|1|2|A|3724
8IR1|1|2|G|3725
8IR1|1|2|A|3726
8IR1|1|2|A|3727
8IR1|1|2|A|3728
8IR1|1|2|U|3730

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36