3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGGAACG(P7G)GC
Length
10 nucleotides
Bulged bases
8IR1|1|2|C|3878, 8IR1|1|2|G|3881
QA status
Modified nucleotides: P7G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8IR1_054 not in the Motif Atlas
Geometric match to HL_8G9Z_001
Geometric discrepancy: 0.1178
The information below is about HL_8G9Z_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.6
Basepair signature
cWW-F
Number of instances in this motif group
21

Unit IDs

8IR1|1|2|G|3873
8IR1|1|2|G|3874
8IR1|1|2|G|3875
8IR1|1|2|A|3876
8IR1|1|2|A|3877
8IR1|1|2|C|3878
8IR1|1|2|G|3879
8IR1|1|2|P7G|3880
8IR1|1|2|G|3881
8IR1|1|2|C|3882

Current chains

Chain 2
28S rRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain k
60S ribosomal protein L32
Chain u
Guanine nucleotide-binding protein-like 3

Coloring options:


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