HL_8IR1_055

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGUUUUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR1_055 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3958

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8IR1|1|2|A|3943
8IR1|1|2|G|3944
8IR1|1|2|U|4066
8IR1|1|2|U|4067
8IR1|1|2|U|4068
8IR1|1|2|U|4069
8IR1|1|2|U|4070

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36