HL_8IR1_060

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR1_060 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.1331

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8IR1|1|2|U|4321
8IR1|1|2|G|4322
8IR1|1|2|A|4323
8IR1|1|2|A|4324
8IR1|1|2|A|4325
8IR1|1|2|G|4326

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L5

Chain J

Ribosome biogenesis protein NSA2 homolog

Chain R

Ribosome biogenesis regulatory protein homolog