HL_8IR1_061

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUGGGUUUUA

Length

11 nucleotides

Bulged bases

8IR1|1|2|U|4354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR1_061 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2414

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8IR1|1|2|U|4352
8IR1|1|2|U|4353
8IR1|1|2|U|4354
8IR1|1|2|G|4355
8IR1|1|2|G|4356
8IR1|1|2|G|4357
8IR1|1|2|U|4358
8IR1|1|2|U|4359
8IR1|1|2|U|4360
8IR1|1|2|U|4361
8IR1|1|2|A|4362

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13