HL_8IR1_062

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCA(1MA)GCGUUCAUAGCGACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR1|1|2|C|4412
8IR1|1|2|C|4413
8IR1|1|2|A|4414
8IR1|1|2|1MA|4415
8IR1|1|2|G|4416
8IR1|1|2|C|4417
8IR1|1|2|G|4418
8IR1|1|2|U|4419
8IR1|1|2|U|4420
8IR1|1|2|C|4421
8IR1|1|2|A|4422
8IR1|1|2|U|4423
8IR1|1|2|A|4424
8IR1|1|2|G|4425
8IR1|1|2|C|4426
8IR1|1|2|G|4427
8IR1|1|2|A|4428
8IR1|1|2|C|4429
8IR1|1|2|G|4430

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain J

Ribosome biogenesis protein NSA2 homolog

Chain u

Guanine nucleotide-binding protein-like 3