HL_8IR1_088

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCGGACUGUCCCCAGUGCGCC

Length

22 nucleotides

Bulged bases

8IR1|1|2|A|1175, 8IR1|1|2|G|1178, 8IR1|1|2|U|1179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR1|1|2|G|1170
8IR1|1|2|G|1171
8IR1|1|2|C|1172
8IR1|1|2|G|1173
8IR1|1|2|G|1174
8IR1|1|2|A|1175
8IR1|1|2|C|1176
8IR1|1|2|U|1177
8IR1|1|2|G|1178
8IR1|1|2|U|1179
8IR1|1|2|C|1180
8IR1|1|2|C|1181
8IR1|1|2|C|1182
8IR1|1|2|C|1183
8IR1|1|2|A|1184
8IR1|1|2|G|1185
8IR1|1|2|U|1186
8IR1|1|2|G|1187
8IR1|1|2|C|1188
8IR1|1|2|G|1189
8IR1|1|2|C|1190
8IR1|1|2|C|1191

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L11