HL_8IR3_038
3D structure
- PDB id
- 8IR3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State B'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGCGAUGGCC
- Length
- 10 nucleotides
- Bulged bases
- 8IR3|1|2|C|2482, 8IR3|1|2|G|2483, 8IR3|1|2|A|2484, 8IR3|1|2|U|2485, 8IR3|1|2|G|2486, 8IR3|1|2|G|2487, 8IR3|1|2|C|2488
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IR3_038 not in the Motif Atlas
- Geometric match to HL_5NFV_001
- Geometric discrepancy: 0.1478
- The information below is about HL_5NFV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.4
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8IR3|1|2|G|2480
8IR3|1|2|G|2481
8IR3|1|2|C|2482
8IR3|1|2|G|2483
8IR3|1|2|A|2484
8IR3|1|2|U|2485
8IR3|1|2|G|2486
8IR3|1|2|G|2487
8IR3|1|2|C|2488
8IR3|1|2|C|2498
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 3
- 60S ribosomal protein L7-like 1
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain f
- Ribosome biogenesis protein NOP53
- Chain g
- 60S ribosomal protein L23a
- Chain q
- Pescadillo homolog
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