HL_8IR3_054

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUAACUAUGACUCU

Length

16 nucleotides

Bulged bases

8IR3|1|2|A|3760

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR3_054 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.1851

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8IR3|1|2|G|3755
8IR3|1|2|A|3756
8IR3|1|2|G|3757
8IR3|1|2|U|3758
8IR3|1|2|A|3759
8IR3|1|2|A|3760
8IR3|1|2|C|3761
8IR3|1|2|U|3762
8IR3|1|2|A|3763
8IR3|1|2|U|3764
8IR3|1|2|G|3765
8IR3|1|2|A|3766
8IR3|1|2|C|3767
8IR3|1|2|U|3768
8IR3|1|2|C|3769
8IR3|1|2|U|3770

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

Ribosome biogenesis regulatory protein homolog

Chain T

Ribosome production factor 2 homolog

Chain w

G Protein Nucleolar 2