HL_8IR3_071

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CU(B8K)AACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8IR3|1|2|G|4694, 8IR3|1|2|C|4698

QA status

Modified nucleotides: B8K

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR3_071 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1613

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8IR3|1|2|C|4688
8IR3|1|2|U|4689
8IR3|1|2|B8K|4690
8IR3|1|2|A|4691
8IR3|1|2|A|4692
8IR3|1|2|C|4693
8IR3|1|2|G|4694
8IR3|1|2|C|4695
8IR3|1|2|C|4696
8IR3|1|2|U|4697
8IR3|1|2|C|4698
8IR3|1|2|U|4699
8IR3|1|2|A|4700
8IR3|1|2|A|4701
8IR3|1|2|G|4702

Current chains

Chain 2

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L9

Chain J

Ribosome biogenesis protein NSA2 homolog

Chain V

60S ribosomal protein L13a