HL_8J1Z_003

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

8J1Z|1|a|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8J1Z_003 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.0817

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8J1Z|1|a|G|123
8J1Z|1|a|G|124
8J1Z|1|a|A|125
8J1Z|1|a|A|126
8J1Z|1|a|A|127
8J1Z|1|a|C|128

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23